Abstract: Since they offer profound insights into the atomic-level interactions between drug candidates and their biological targets, molecular dynamics (MD) simulations have become extremely ...

Geostationary orbit simulation in GlowScript VPython: a practical tutorial that demonstrates orbital mechanics and physics-based visualization of satellites maintaining a fixed position relative to ...

In this section we will build the system via Leap and run minimization via Sander. Here a brief description of the system and the procedure used to generate the topology and coordinate files. For this ...

In this tutorial, we use GlowScript VPython to build a dipole electric field simulation step by step. Learn how to model charges, compute field vectors, and create an interactive visualization that ...

We study the cavitation bubble that forms as a nano-scale spherical surface is detached from a flat surface using molecular dynamics (MD) simulations. This investigation maps the onset and early ...

The success of a molecular dynamics simulation depends on the accuracy of the force field used to define the atomic interactions. It is challenging to train both classical and modern machine-learning ...

Heat transfer is a process of spontaneous heat exchange caused by temperature difference (Li and Liu, 2012; Zhang et al., 2022). When the heat flow passes through the solid-liquid interface, there ...

A new technical paper titled “Modeling and Simulating Emerging Memory Technologies: A Tutorial” was published by researchers at TU Dortmund, TU Dresden, Karlsruhe Institute of Technology (KIT) and FAU ...

Abstract: Input uncertainty in the simulation output is caused by the estimation error in the input models of the simulator due to finiteness of the data from which ...

This document contains a tutorial and training exercise for getting started using the VIC model across a spatial domain and making use of the ITaP Research Computing cluster system resources. It ...

Creative Commons (CC): This is a Creative Commons license. Attribution (BY): Credit must be given to the creator. Atomistic molecular dynamics (MD) simulations have become an indispensable tool for ...